{ "_id": "6a27abd424555f66ed534611", "Package": "cylcop", "Title": "Circular-Linear Copulas with Angular Symmetry for Movement Data", "Version": "0.2.1", "URL": "https://github.com/floo66/cylcop", "BugReports": "https://github.com/floo66/cylcop/issues", "Authors@R": "person(given = \"Florian\",\nfamily = \"Hodel\",\nrole = c(\"aut\", \"cre\"),\nemail = \"florian.hodel@yahoo.com\",\ncomment = c(ORCID = \"0000-0002-0099-1006\"))", "Maintainer": "Florian Hodel ", "Description": "Classes (S4) of circular-linear, symmetric copulas with\ncorresponding methods, extending the 'copula' package. These\ncopulas are especially useful for modeling correlation in\ndiscrete-time movement data. Methods for density, (conditional)\ndistribution, random number generation, bivariate dependence\nmeasures and fitting parameters using maximum likelihood and\nother approaches. The package also contains methods for\nvisualizing movement data and copulas.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RdMacros": "Rdpack", "RoxygenNote": "7.3.3", "Collate": "'cyl_cop_class.R' 'Ccond.R' 'aaaglobal.R' 'correlation.R'\n'cyl_cubsec.R' 'cyl_quadsec.R' 'cyl_rect_combine.R'\n'cyl_rot_combine.R' 'cyl_vonmises.R' 'cylcop-package.R'\n'density.R' 'deprecated.R' 'fit_cop_corr.R' 'fit_cop_mle.R'\n'fit_margin.R' 'gof.R' 'joint_distr.R' 'mixed_linear.R'\n'mixedvonmises.R' 'opt_auto.R' 'plotting_functions.R'\n'simulate_trajectory.R' 'utils.R' 'wrappedcauchy.R' 'zzz.R'", "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\nlibgsl0-dev texlive libicu-dev libpng-dev libuv1-dev\nlibgl1-mesa-dev libssl-dev zlib1g-dev", "Repository": "https://floo66.r-universe.dev", "Date/Publication": "2025-10-01 10:42:30 UTC", "RemoteUrl": "https://github.com/floo66/cylcop", "RemoteRef": "HEAD", "RemoteSha": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-08 06:59:07 UTC", "User": "root" }, "Author": "Florian Hodel [aut, cre] (ORCID:\n)", "MD5sum": "0a7c3a58c86a1b85988c8a263d7bed2b", "_user": "floo66", "_type": "src", "_file": "cylcop_0.2.1.tar.gz", "_fileid": "245376173b49013d281ebc115850747e02e3bba3f0f320e17550605458d715f6", "_filesize": 583861, "_sha256": "245376173b49013d281ebc115850747e02e3bba3f0f320e17550605458d715f6", "_created": "2026-06-08T06:59:07.000Z", "_published": "2026-06-09T05:59:48.587Z", "_distro": "noble", "_jobs": [ { "job": 80256645353, "time": 242, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7473519399" }, { "job": 80256645692, "time": 563, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7473600614" }, { "job": 80256644944, "time": 197, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7499636507" }, { "job": 80256644942, "time": 193, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7499566648" }, { "job": 80256645186, "time": 381, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7473463369" }, { "job": 80256645645, "time": 184, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7473506229" }, { "job": 80256645464, "time": 164, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7473501736" }, { "job": 80256645205, "time": 164, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7473501495" }, { "job": 80256645018, "time": 106, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7499501394" } ], "_buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/floo66/cylcop", "_commit": { "id": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "author": "floo66 ", "committer": "floo66 ", "message": "rem hidden files\n", "time": 1759315350 }, "_maintainer": { "name": "Florian Hodel", "email": "florian.hodel@yahoo.com", "login": "floo66", "uuid": 59091539, "orcid": "0000-0002-0099-1006" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "circular", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "dplyr", "version": ">= 0.7.0", "role": "Imports" }, { "package": "copula", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "GoFKernel", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "infotheo", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "rgl", "role": "Imports" }, { "package": "viridis", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "movMF", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "mixR", "role": "Imports" }, { "package": "transport", "role": "Imports" } ], "_owner": "floo66", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-39", "n": 1 }, { "week": "2025-40", "n": 6 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "floo66", "count": 27, "uuid": 59091539 } ], "_userbio": { "uuid": 59091539, "type": "user", "name": "floo66" }, "_downloads": { "count": 199, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cylcop" }, "_devurl": "https://github.com/floo66/cylcop", "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/cylcop.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/floo66/cylcop", "_realowner": "floo66", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-08-06" }, { "version": "0.2.0", "date": "2022-10-29" }, { "version": "0.2.1", "date": "2025-10-03" } ], "_exports": [ "angstep2xy", "bearing", "ccylcop", "circ_plot", "cop_plot", "cop_scat_plot", "cor_cyl", "cramer_vonmises", "cyl_cubsec", "cyl_quadsec", "cyl_rect_combine", "cyl_rot_combine", "cyl_vonmises", "cylcop_get_option", "cylcop_set_option", "dcylcop", "ddens", "dgammamix", "djoint", "dlnormmix", "dnormmix", "dvonmisesmix", "dweibullmix", "dwrappedcauchy", "fit_angle", "fit_cylcop_cor", "fit_cylcop_ml", "fit_steplength", "full2half_circ", "half2full_circ", "make_traj", "mi_cyl", "mle.mixedvonmises", "mle.vonmisesmix", "numerical_conditional_cop", "numerical_inv_conditional_cop", "opt_auto", "opt_circ_bw", "opt_lin_bw", "optCor", "optML", "pcylcop", "pdens", "pgammamix", "pjoint", "plnormmix", "plot", "plot_circ_hist", "plot_cop_scat", "plot_cop_surf", "plot_joint_box", "plot_joint_circ", "plot_joint_scat", "plot_track", "pnormmix", "prob", "pvonmisesmix", "pweibullmix", "pwrappedcauchy", "qdens", "qgammamix", "qlnormmix", "qmixedvonmises", "qnormmix", "qvonmisesmix", "qweibullmix", "qwrappedcauchy", "rcylcop", "rdens", "rgammamix", "rjoint", "rlnormmix", "rnormmix", "rvonmisesmix", "rweibullmix", "rwrappedcauchy", "scat_plot", "set_cop_param", "show", "traj_get", "traj_plot", "traj_sim", "wasserstein" ], "_help": [ { "page": "angstep2xy", "title": "Calculate the Next Position in a Trajectory from a Turn Angle and a Step Length", "topics": [ "angstep2xy" ] }, { "page": "bearing", "title": "Compass Bearing of a Line Between 2 Points", "topics": [ "bearing" ] }, { "page": "ccylcop", "title": "Conditional Distributions of Circular-Linear Copulas", "topics": [ "ccylcop", "ccylcop,Copula-method", "ccylcop,cyl_cubsec-method", "ccylcop,cyl_quadsec-method", "ccylcop,cyl_rect_combine-method", "ccylcop,cyl_rot_combine-method", "ccylcop,cyl_vonmises-method" ] }, { "page": "cor_cyl", "title": "Estimate a Rank-Based Circular-Linear Correlation Coefficient", "topics": [ "cor_cyl" ] }, { "page": "Cramer_vonMises", "title": "Cramér-von-Mises criterion", "topics": [ "cramer_vonmises" ] }, { "page": "cyl_copula-class", "title": "An S4 Class of Bivariate Copulas on the Cylinder", "topics": [ "cyl_copula-class" ] }, { "page": "cyl_cubsec", "title": "Construction of ''cyl_cubsec'' Objects", "topics": [ "cyl_cubsec" ] }, { "page": "cyl_cubsec-class", "title": "An S4 Class of Bivariate Copulas with Cubic Sections", "topics": [ "cyl_cubsec-class" ] }, { "page": "cyl_quadsec", "title": "Construction of ''cyl_quadsec'' Objects", "topics": [ "cyl_quadsec" ] }, { "page": "cyl_quadsec-class", "title": "An S4 Class of Bivariate Copulas with Quadratic Sections", "topics": [ "cyl_quadsec-class" ] }, { "page": "cyl_rect_combine", "title": "Construction of ''cyl_rect_combine'' Objects", "topics": [ "cyl_rect_combine" ] }, { "page": "cyl_rect_combine-class", "title": "An S4 Class of Circular-Linear Copulas Generated from a Rectangular Patchwork", "topics": [ "cyl_rect_combine-class" ] }, { "page": "cyl_rot_combine", "title": "Construction of ''cyl_rot_combine'' Objects", "topics": [ "cyl_rot_combine" ] }, { "page": "cyl_rot_combine-class", "title": "An S4 Class of Circular-Linear Copulas generated from Linear Combinations of Copulas", "topics": [ "cyl_rot_combine-class" ] }, { "page": "cyl_vonmises", "title": "Construction of ''cyl_vonmises'' Objects", "topics": [ "cyl_vonmises" ] }, { "page": "cyl_vonmises-class", "title": "An S4 Class of Bivariate von Mises Copulas", "topics": [ "cyl_vonmises-class" ] }, { "page": "Cylcop", "title": "Distribution, Density, and Random Number Generation for Circular-Linear Copulas'", "topics": [ "Cylcop", "dcylcop", "dcylcop,matrix,Copula-method", "dcylcop,matrix,cyl_cubsec-method", "dcylcop,matrix,cyl_quadsec-method", "dcylcop,matrix,cyl_rect_combine-method", "dcylcop,matrix,cyl_rot_combine-method", "dcylcop,matrix,cyl_vonmises-method", "pcylcop", "pcylcop,matrix,Copula-method", "pcylcop,matrix,cyl_cubsec-method", "pcylcop,matrix,cyl_quadsec-method", "pcylcop,matrix,cyl_rect_combine-method", "pcylcop,matrix,cyl_rot_combine-method", "pcylcop,matrix,cyl_vonmises-method", "rcylcop", "rcylcop,numeric,Copula-method", "rcylcop,numeric,cyl_cubsec-method", "rcylcop,numeric,cyl_quadsec-method", "rcylcop,numeric,cyl_rect_combine-method", "rcylcop,numeric,cyl_rot_combine-method", "rcylcop,numeric,cyl_vonmises-method" ] }, { "page": "cylcop_get_option", "title": "Get Package Options", "topics": [ "cylcop_get_option" ] }, { "page": "cylcop_set_option", "title": "Set Package Options", "topics": [ "cylcop_set_option", "silent", "verbose," ] }, { "page": "cylcop-deprecated", "title": "Deprecated functions", "topics": [ "circ_plot", "cop_plot", "cop_scat_plot", "cylcop-deprecated", "make_traj", "mle.mixedvonmises", "qmixedvonmises", "scat_plot", "traj_plot" ] }, { "page": "dens", "title": "Density, Distribution, Random Number Generation and Quantiles of Kernel Density Estimates", "topics": [ "ddens", "dens", "pdens", "qdens", "rdens" ] }, { "page": "fit_angle", "title": "Fit a Circular Univariate Distribution", "topics": [ "fit_angle" ] }, { "page": "fit_cylcop_cor", "title": "Estimate Copula Parameters from Correlation Measures", "topics": [ "fit_cylcop_cor", "fit_cylcop_cor,cyl_cubsec-method", "fit_cylcop_cor,cyl_quadsec-method", "fit_cylcop_cor,cyl_rect_combine-method", "fit_cylcop_cor,cyl_rot_combine-method", "fit_cylcop_cor,cyl_vonmises-method", "optCor" ] }, { "page": "fit_cylcop_ml", "title": "Estimate Parameters of a Circular-Linear Copula According to Maximum Likelihood", "topics": [ "fit_cylcop_ml", "optML" ] }, { "page": "fit_steplength", "title": "Fit a Linear Univariate Distribution", "topics": [ "fit_steplength" ] }, { "page": "full2half_circ", "title": "Convert Angle from Full Circle to Half Circle", "topics": [ "full2half_circ" ] }, { "page": "gammamix", "title": "Density, Distribution, Quantiles and Random Number Generation for the mixed gamma distribution", "topics": [ "dgammamix", "gammamix", "pgammamix", "qgammamix", "rgammamix" ] }, { "page": "half2full_circ", "title": "Convert Angle from Half Circle to Full Circle", "topics": [ "half2full_circ" ] }, { "page": "joint", "title": "Density, Distribution, Quantiles and Random Number Generation for joint distributions", "topics": [ "djoint", "joint", "pjoint", "rjoint" ] }, { "page": "lnormmix", "title": "Density, Distribution, Quantiles and Random Number Generation for the mixed log-normal distribution", "topics": [ "dlnormmix", "lnormmix", "plnormmix", "qlnormmix", "rlnormmix" ] }, { "page": "mi_cyl", "title": "Estimate the Mutual Information Between a Circular and a Linear Random Variable", "topics": [ "mi_cyl" ] }, { "page": "mle.vonmisesmix", "title": "Mixed von Mises Maximum Likelihood Estimates", "topics": [ "mle.vonmisesmix" ] }, { "page": "normmix", "title": "Density, Distribution, Quantiles and Random Number Generation for the mixed normal distribution", "topics": [ "dnormmix", "normmix", "pnormmix", "qnormmix", "rnormmix" ] }, { "page": "numerical_conditional_cop", "title": "Numerically Calculate the Conditional Copula", "topics": [ "numerical_conditional_cop" ] }, { "page": "numerical_inv_conditional_cop", "title": "Numerically calculate the inverse of the conditional copula", "topics": [ "numerical_inv_conditional_cop" ] }, { "page": "opt_auto", "title": "Automatically Find the Best Fitting Copula", "topics": [ "opt_auto" ] }, { "page": "opt_circ_bw", "title": "Find the Optimal Bandwidth for a Circular Kernel Density Estimate", "topics": [ "opt_circ_bw" ] }, { "page": "opt_lin_bw", "title": "Find the Optimal Bandwidth for a Linear Kernel Density Estimate", "topics": [ "opt_lin_bw" ] }, { "page": "plot_circ_hist", "title": "Circular Histogram of Turn Angles", "topics": [ "plot_circ_hist" ] }, { "page": "plot_cop_scat", "title": "Scatterplot of Copula Values", "topics": [ "plot_cop_scat" ] }, { "page": "plot_cop_surf", "title": "Surface Plot or Heat Map of the Distribution or the Density of a Copula", "topics": [ "plot_cop_surf" ] }, { "page": "plot_joint_box", "title": "Circular Boxplot of Turn Angles and Step Lengths", "topics": [ "plot_joint_box" ] }, { "page": "plot_joint_circ", "title": "Circular Scatterplot of Turn Angles and Step Lengths", "topics": [ "plot_joint_circ" ] }, { "page": "plot_joint_scat", "title": "Scatterplot of Turn Angles and Step Lengths", "topics": [ "plot_joint_scat" ] }, { "page": "plot_track", "title": "Plot a Trajectory in Euclidean Space", "topics": [ "plot_track" ] }, { "page": "plot-cyl_copula-missing-method", "title": "Plot ''cyl_copula'' Objects", "topics": [ "plot,cyl_copula,missing-method" ] }, { "page": "prob-cyl_copula-method", "title": "Calculate the C-Volume of a ''cyl_copula'' Copula", "topics": [ "prob", "prob,cyl_copula-method" ] }, { "page": "set_cop_param", "title": "Change Attributes of ''cyl_copula'' Objects", "topics": [ "set_cop_param", "set_cop_param,cyl_cubsec-method", "set_cop_param,cyl_quadsec-method", "set_cop_param,cyl_rect_combine-method", "set_cop_param,cyl_rot_combine-method", "set_cop_param,cyl_vonmises-method" ] }, { "page": "show-cyl_copula-method", "title": "Print Information of ''cyl_copula'' Objects", "topics": [ "show,cyl_copula-method", "show,cyl_rect_combine-method", "show,cyl_rot_combine-method" ] }, { "page": "traj_get", "title": "Get a Trajectory from Coordinates", "topics": [ "traj_get" ] }, { "page": "traj_sim", "title": "Generate a Trajectory with Correlated Step Lengths and Turn Angles", "topics": [ "traj_sim" ] }, { "page": "vonmisesmix", "title": "Density, Distribution, Quantiles and Random Number Generation for the mixed von Mises Distribution", "topics": [ "dvonmisesmix", "pvonmisesmix", "qvonmisesmix", "rvonmisesmix", "vonmisesmix" ] }, { "page": "wasserstein", "title": "Calculate the Wasserstein Distance", "topics": [ "wasserstein" ] }, { "page": "weibullmix", "title": "Density, Distribution, Quantiles and Random Number Generation for the mixed Weibull distribution", "topics": [ "dweibullmix", "pweibullmix", "qweibullmix", "rweibullmix", "weibullmix" ] }, { "page": "wrappedcauchy", "title": "Density, Distribution, Quantiles and Random Number Generation for the Wrapped Cauchy Distribution", "topics": [ "dwrappedcauchy", "pwrappedcauchy", "qwrappedcauchy", "rwrappedcauchy", "wrappedcauchy" ] } ], "_rundeps": [ "ADGofTest", "askpass", "base64enc", "boot", "bslib", "cachem", "circular", "cli", "clue", "cluster", "colorspace", "copula", "cowplot", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "GoFKernel", "gridExtra", "gsl", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "infotheo", "isoband", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "memoise", "mime", "mixR", "movMF", "mvtnorm", "numDeriv", "openssl", "otel", "pcaPP", "pillar", "pkgconfig", "plotly", "promises", "pspline", "purrr", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "rgl", "rlang", "rmarkdown", "S7", "sass", "scales", "skmeans", "slam", "stabledist", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "transport", "utf8", "vctrs", "viridis", "viridisLite", "withr", "xfun", "yaml" ], "_score": 2.3010299956639813, "_indexed": true, "_nocasepkg": "cylcop", "_universes": [ "floo66" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-06-08T07:03:19.000Z", "distro": "noble", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "ea8c8fc37d0bc71e38619380aad846879f386292a3fd69bdd5e0730853133f02", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-06-08T07:08:45.000Z", "distro": "noble", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "d1eb05309756e6f913d9be5449b80864add25159a505227301c99f14a1fb518e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.5.3", "os": "mac", "version": "0.2.1", "date": "2026-06-09T05:58:12.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "5fcbc80bffbf094b2af1b69c710e3a25a36fe33b64ddaa3cc2f1d2ca106311f0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.6.0", "os": "mac", "version": "0.2.1", "date": "2026-06-09T05:53:13.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "2a1f20f2382d48fb95dec0001c5af0ec737060d2d24c291f769b96286e8b3030", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-06-08T07:03:27.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "9a91a3d18a419bf54e4a3b83088137874bd4f495f5c031cb4bdeab04c35b52d2", "status": "success", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.7.0", "os": "win", "version": "0.2.1", "date": "2026-06-08T07:01:48.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "dd7d4455874d10674073d9ef3f9bd24d15257be97faa7309742576004fa14440", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.5.3", "os": "win", "version": "0.2.1", "date": "2026-06-08T07:01:45.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "c7810ddc059d796d039e6ae555dbab9d456f7c8dcb668c645a9544cbf42ba5c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" }, { "r": "4.6.0", "os": "win", "version": "0.2.1", "date": "2026-06-09T05:48:12.000Z", "commit": "fae18b64b2180db7b0f55dd70fdf0f15a27fef96", "fileid": "a18b2f77379960e79eb9c12b3e85fb52b62a3faf0620791b3eea1e2e83e15f8b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/floo66/actions/runs/27121027186" } ] }